Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs11018537 chr11:87860095 A/G 2.78E-5 368 20.07 18.95 5.7 KM Plot
LIHC rs11124549 chr2:37061780 A/G 1.14E-5 368 20.4 14.07 8.73 KM Plot
LIHC rs11124552 chr2:37142754 A/G 7.18E-9 368 20.5 14.6 6.52 KM Plot
LIHC rs111399530 chr14:73469727 G/A 2.52E-6 368 20.27 13.17 4.93 KM Plot
LIHC rs111444486 chr11:73501240 G/A 2.58E-6 364 19.27 21.2 1.87 KM Plot
LIHC rs111461043 chr14:73560505 G/A 4.76E-6 366 20.27 13.3 4.93 KM Plot
LIHC rs111553349 chr11:73556945 T/G 3.31E-6 368 19.5 20.48 1.87 KM Plot
LIHC rs111558273 chr14:73560254 G/A 4.76E-6 366 20.27 13.3 4.93 KM Plot
LIHC rs111577221 chr11:73525535 T/G 3.23E-6 368 19.5 20.95 1.87 KM Plot
LIHC rs111864101 chr2:49670870 AG/A 0 361 19.3 21.15 0.75 KM Plot
LIHC rs112025779 chr15:75292700 G/A 9.03E-9 358 19.6 20.6 1.13 KM Plot
LIHC rs112098333 chr15:91752550 G/C 1.66E-5 367 20.5 14.33 9.87 KM Plot
LIHC rs11212172 chr11:107212729 C/A 1.17E-5 360 20.03 18.78 1.87 KM Plot
LIHC rs11235911 chr11:73517259 A/G 2.61E-6 366 19.43 21.2 1.87 KM Plot
LIHC rs11235918 chr11:73532857 C/T 3.59E-6 368 19.5 20.48 1.87 KM Plot